multispot5.h File Reference

#include <vector>
#include <string>
#include <fstream>
#include <iostream>
#include <tr1/memory>
#include <cvd/image.h>
#include <cvd/byte.h>
#include <TooN/TooN.h>
#include <TooN/so2.h>
#include "utility.h"
#include "mt19937.h"

Go to the source code of this file.

Classes
class	FitSpotsGraphics
	Graphics class for FittingSpots. More...
class	UserInterfaceCallback
	Callback class used by FitSpots to provide enough hooks for a user interface. More...
struct	UserInterfaceCallback::UserIssuedStop
struct	LogFileParseError
	Null struct thrown if a parse error is encountered when trying to load a log file. More...
struct	StateParameters
	Internal state (excluding fixed settings) which represents the entire internal state of spot fitting. More...
Functions
std::auto_ptr< FitSpotsGraphics >	null_graphics ()
std::auto_ptr < UserInterfaceCallback >	null_ui ()
StateParameters	generate_state_parameters_ye_olde (const CVD::BasicImage< double > &log_ratios, const std::vector< CVD::Image< float > > &ims, std::vector< CVD::ImageRef > pixels)
void	fit_spots_new (const std::vector< CVD::Image< float > > &ims, StateParameters &p, std::ofstream &save_spots, FitSpotsGraphics &)
void	fit_spots_new (const std::vector< CVD::Image< float > > &ims, StateParameters &p, std::ofstream &save_spots, FitSpotsGraphics &, UserInterfaceCallback &)
StateParameters	parse_log_file (std::istream &in)

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Function Documentation

StateParameters generate_state_parameters_ye_olde	(	const CVD::BasicImage< double > &	log_ratios,
		const std::vector< CVD::Image< float > > &	ims,
		std::vector< CVD::ImageRef >	pixels
	)

void fit_spots_new	(	const std::vector< CVD::Image< float > > &	ims,
		StateParameters &	p,
		std::ofstream &	save_spots,
		FitSpotsGraphics &
	)

void fit_spots_new	(	const std::vector< CVD::Image< float > > &	ims,
		StateParameters &	p,
		std::ofstream &	save_spots,
		FitSpotsGraphics &	,
		UserInterfaceCallback &
	)

StateParameters parse_log_file

(

std::istream &

in

)